Dr. Priya, a molecular biologist at a research institute in Pune, is working on producing a therapeutic protein — human insulin — using recombinant DNA technology. She isolates the human insulin gene from a cDNA library and clones it into plasmid pMI322 (which carries amp^R and tet^R genes) by inserting the insulin gene within the tet^R gene using EcoRI. Transformed E. coli cells are plated on ampicillin-only and tetracycline-only plates. Plate A (ampicillin) shows many colonies; Plate B (tetracycline) shows very few colonies.
Read the following passage carefully and answer the questions that follow:
Dr. Priya, a molecular biologist at a research institute in Pune, is working on producing a therapeutic protein — human insulin — using recombinant DNA technology. She isolates the human insulin gene (comprising A-chain and B-chain coding sequences) from a cDNA library. She clones this gene into a plasmid vector called pMI322, which contains an ampicillin resistance gene (amp^R) and a tetracycline resistance gene (tet^R). The insulin gene is inserted within the tet^R gene using the restriction enzyme EcoRI. The recombinant plasmid is then introduced into E. coli cells by treating them with CaCl₂ solution followed by heat shock. The transformed bacteria are plated on two sets of agar plates — one containing ampicillin only, and another containing tetracycline only.
Dr. Priya observes the following results after overnight incubation:
| Plate | Antibiotic | Colonies observed |
|-------|------------|------------------|
| Plate A | Ampicillin only | Many colonies |
| Plate B | Tetracycline only | Very few colonies |
She then transfers the bacteria to a large stirred-tank bioreactor for large-scale production of insulin.
(a) Why did Dr. Priya use cDNA rather than genomic DNA to clone the human insulin gene into E. coli? (1 mark)
(b) Identify which colonies on Plate A contain the recombinant plasmid (with the insulin gene inserted) and which contain the non-recombinant plasmid. Justify your answer using the principle of insertional inactivation. (2 marks)
(c) Name ONE essential feature that the plasmid pMI322 must possess (other than antibiotic resistance genes) to ensure successful cloning, and state its function. (1 mark)
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(a) Why cDNA instead of genomic DNA? (1 mark)
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• cDNA (complementary DNA) is synthesised from mature mRNA using reverse transcriptase and therefore contains NO INTRONS (non-coding intervening sequences). (1)
— Genomic DNA contains introns; E. coli (a prokaryote) lacks the RNA-splicing machinery (spliceosome) to remove introns from pre-mRNA → the correct functional protein would NOT be produced if genomic DNA were used.
— cDNA represents only the coding sequence → E. coli can directly transcribe and translate it to produce functional human insulin.
[Award 1 mark for: 'cDNA has no introns / E. coli cannot process introns / cDNA made from mRNA has only coding sequences' — any one of these phrasings accepted]
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(b) Identifying recombinant vs non-recombinant colonies using insertional inactivation (2 marks)
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PRINCIPLE OF INSERTIONAL INACTIVATION:
• The insulin gene is inserted INTO the tet^R gene → this disrupts/inactivates the tet^R gene → bacteria carrying the recombinant plasmid CANNOT grow on tetracycline.
• The amp^R gene remains intact in ALL transformed bacteria (recombinant and non-recombinant) → ALL transformed bacteria grow on ampicillin (Plate A).
IDENTIFICATION:
• Colonies on Plate A that ALSO grow on tetracycline (Plate B) = NON-RECOMBINANT (tet^R gene intact; no insert). (1)
• Colonies on Plate A that do NOT grow on tetracycline (Plate B) = RECOMBINANT (tet^R gene disrupted by insulin gene insert; these carry the insulin gene). (1)
[REPLICA PLATING METHOD — acceptable additional detail, not required for marks]
To identify recombinant colonies: replica plate all colonies from Plate A onto a tetracycline plate → colonies that fail to appear on the tetracycline replica are the recombinant (insulin-gene-containing) transformants.
SUMMARY TABLE (for clarity):
| Colony type | Grows on Amp (Plate A) | Grows on Tet (Plate B) | Conclusion |
|-------------|----------------------|----------------------|------------|
| Non-recombinant | YES | YES | tet^R intact; no insert |
| Recombinant (with insulin gene) | YES | NO | tet^R disrupted by insert |
[Award 1 mark for correctly identifying recombinant colonies as those that grow on Plate A but NOT on Plate B]
[Award 1 mark for correctly explaining the principle: insulin gene insertion disrupts tet^R → tetracycline sensitivity]
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(c) One essential vector feature (other than antibiotic resistance) and its function (1 mark)
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• Origin of Replication (ori): the specific DNA sequence from which replication of the plasmid is initiated inside the host cell. It ensures the recombinant plasmid replicates autonomously within E. coli and is maintained in daughter cells during cell division. (1)
[Acceptable alternatives for 1 mark — any ONE of the following]
• Cloning site / Multiple Cloning Site (MCS) / Restriction site: the specific recognition sequence where the restriction enzyme cuts to allow insertion of the foreign gene.
• Promoter sequence: required for transcription of the cloned insulin gene in the host bacterium.
[Do NOT award mark for 'selectable marker' — the question explicitly excludes antibiotic resistance genes]
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MARK SUMMARY: (a) 1 + (b) 2 + (c) 1 = 4 marks
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